| Stem definition | Drug id | CAS RN |
|---|---|---|
| histone deacetylase inhibitors | 4124 | 149647-78-9 |
None
| Property | Value | Reference |
|---|---|---|
| BDDCS (Biopharmaceutical Drug Disposition Classification System) | 2 | Hosey CM, Chan R, Benet LZ |
| BA (Bioavailability) | 43 % | Kim MT, Sedykh A, Chakravarti SK, Saiakhov RD, Zhu H |
| Vd (Volume of distribution) | 0.50 L/kg | Lombardo F, Berellini G, Obach RS |
| CL (Clearance) | 28 mL/min/kg | Lombardo F, Berellini G, Obach RS |
| fu (Fraction unbound in plasma) | 0.29 % | Lombardo F, Berellini G, Obach RS |
| t_half (Half-life) | 0.76 hours | Lombardo F, Berellini G, Obach RS |
| S (Water solubility) | 0.07 mg/mL | Bocci G, Oprea TI, Benet LZ |
| Date | Agency | Company | Orphan |
|---|---|---|---|
| Oct. 6, 2006 | FDA | MERCK |
| MedDRA adverse event term | Likelihood ratio | Likelihood ratio threshold | Patients taking drug having adverse event | Patients taking drug not having adverse event | Patients not taking drug having adverse event | Patients not taking drug not having adverse event |
|---|---|---|---|---|---|---|
| Febrile neutropenia | 177.27 | 40.78 | 73 | 1275 | 118376 | 63369298 |
| Electrocardiogram QT prolonged | 79.60 | 40.78 | 34 | 1314 | 59496 | 63428178 |
| Dehydration | 57.21 | 40.78 | 39 | 1309 | 173315 | 63314359 |
| Thrombocytopenia | 47.45 | 40.78 | 33 | 1315 | 151124 | 63336550 |
| Product use in unapproved indication | 46.86 | 40.78 | 35 | 1313 | 179045 | 63308629 |
| Platelet count decreased | 42.74 | 40.78 | 28 | 1320 | 116094 | 63371580 |
| Cutaneous T-cell lymphoma | 42.61 | 40.78 | 9 | 1339 | 1371 | 63486303 |
| Sepsis | 42.44 | 40.78 | 31 | 1317 | 153092 | 63334582 |
| MedDRA adverse event term | Likelihood ratio | Likelihood ratio threshold | Patients taking drug having adverse event | Patients taking drug not having adverse event | Patients not taking drug having adverse event | Patients not taking drug not having adverse event |
|---|---|---|---|---|---|---|
| Torsade de pointes | 79.38 | 32.83 | 24 | 1577 | 7185 | 34948145 |
| Lymphopenia | 60.16 | 32.83 | 24 | 1577 | 16311 | 34939019 |
| Febrile neutropenia | 52.46 | 32.83 | 46 | 1555 | 136803 | 34818527 |
| Product use in unapproved indication | 46.00 | 32.83 | 40 | 1561 | 117459 | 34837871 |
| Anaemia | 36.77 | 32.83 | 49 | 1552 | 233286 | 34722044 |
| Electrocardiogram abnormal | 35.46 | 32.83 | 14 | 1587 | 9233 | 34946097 |
| Platelet count decreased | 33.78 | 32.83 | 34 | 1567 | 119683 | 34835647 |
| MedDRA adverse event term | Likelihood ratio | Likelihood ratio threshold | Patients taking drug having adverse event | Patients taking drug not having adverse event | Patients not taking drug having adverse event | Patients not taking drug not having adverse event |
|---|---|---|---|---|---|---|
| Febrile neutropenia | 145.79 | 29.20 | 94 | 2705 | 230905 | 79510684 |
| Product use in unapproved indication | 127.01 | 29.20 | 89 | 2710 | 250270 | 79491319 |
| Torsade de pointes | 77.00 | 29.20 | 28 | 2771 | 19284 | 79722305 |
| Platelet count decreased | 69.07 | 29.20 | 56 | 2743 | 194608 | 79546981 |
| Cutaneous T-cell lymphoma | 56.05 | 29.20 | 14 | 2785 | 2689 | 79738900 |
| Thrombocytopenia | 56.00 | 29.20 | 57 | 2742 | 265202 | 79476387 |
| Product administered to patient of inappropriate age | 50.38 | 29.20 | 15 | 2784 | 5538 | 79736051 |
| Sepsis | 44.71 | 29.20 | 51 | 2748 | 269377 | 79472212 |
| Malignant neoplasm progression | 43.73 | 29.20 | 37 | 2762 | 135953 | 79605636 |
| Acute myeloid leukaemia | 42.40 | 29.20 | 21 | 2778 | 30864 | 79710725 |
| Dehydration | 41.20 | 29.20 | 47 | 2752 | 248140 | 79493449 |
| Anaemia | 38.09 | 29.20 | 61 | 2738 | 444954 | 79296635 |
| Lymphopenia | 36.74 | 29.20 | 19 | 2780 | 30538 | 79711051 |
| Product use issue | 33.55 | 29.20 | 39 | 2760 | 209783 | 79531806 |
| Disease progression | 32.41 | 29.20 | 36 | 2763 | 184326 | 79557263 |
| Electrocardiogram abnormal | 31.01 | 29.20 | 14 | 2785 | 16723 | 79724866 |
None
| Source | Code | Description |
|---|---|---|
| ATC | L01XH01 | ANTINEOPLASTIC AND IMMUNOMODULATING AGENTS ANTINEOPLASTIC AGENTS OTHER ANTINEOPLASTIC AGENTS Histone deacetylase (HDAC) inhibitors |
| FDA MoA | N0000175071 | Histone Deacetylase Inhibitors |
| FDA EPC | N0000175588 | Histone Deacetylase Inhibitor |
| MeSH PA | D000970 | Antineoplastic Agents |
| MeSH PA | D004791 | Enzyme Inhibitors |
| MeSH PA | D056572 | Histone Deacetylase Inhibitors |
| CHEBI has role | CHEBI:35610 | antineoplastic agents |
| CHEBI has role | CHEBI:61115 | histone deacetylase inhibitors |
| CHEBI has role | CHEBI:68495 | Type I cell-death inducers |
| Disease | Relation | SNOMED_ID | DOID |
|---|---|---|---|
| Primary cutaneous T-cell lymphoma | indication | 400122007 | |
| Hypocalcemia | contraindication | 5291005 | |
| Dehydration | contraindication | 34095006 | |
| Hypokalemia | contraindication | 43339004 | |
| Diarrhea | contraindication | 62315008 | |
| Diabetes mellitus | contraindication | 73211009 | DOID:9351 |
| Hyperglycemia | contraindication | 80394007 | DOID:4195 |
| Prolonged QT interval | contraindication | 111975006 | |
| Deep venous thrombosis | contraindication | 128053003 | |
| Hypomagnesemia | contraindication | 190855004 | |
| Pulmonary thromboembolism | contraindication | 233935004 | |
| Disease of liver | contraindication | 235856003 | DOID:409 |
| Anemia | contraindication | 271737000 | DOID:2355 |
| Pregnancy, function | contraindication | 289908002 | |
| Thrombocytopenic disorder | contraindication | 302215000 | DOID:1588 |
| Thromboembolic disorder | contraindication | 371039008 | |
| Breastfeeding (mother) | contraindication | 413712001 | |
| Vomiting | contraindication | 422400008 | |
| Congenital long QT syndrome | contraindication | 442917000 |
None
None
| Dissociation level | Dissociation constant | Type (acidic/basic) |
|---|---|---|
| pKa1 | 9.34 | acidic |
| Formulation strength | Trade name | Applicant | Application number | Approval date | Type | Dose form | Route | Patent number | Patent expiration date | Patent use |
|---|---|---|---|---|---|---|---|---|---|---|
| 100MG | ZOLINZA | MSD SUB MERCK | N021991 | Oct. 6, 2006 | RX | CAPSULE | ORAL | 7732490 | March 4, 2023 | TREATMENT OF CUTANEOUS MANIFESTATIONS IN PATIENTS WITH CUTANEOUS T-CELL LYMPHOMA (CTCL) |
| 100MG | ZOLINZA | MSD SUB MERCK | N021991 | Oct. 6, 2006 | RX | CAPSULE | ORAL | 8067472 | March 4, 2023 | TREATMENT OF CUTANEOUS MANIFESTATIONS IN PATIENTS WITH CUTANEOUS T-CELL LYMPHOMA (CTCL) |
| 100MG | ZOLINZA | MSD SUB MERCK | N021991 | Oct. 6, 2006 | RX | CAPSULE | ORAL | 8101663 | March 4, 2023 | TREATMENT OF CUTANEOUS MANIFESTATIONS IN PATIENTS WITH CUTANEOUS T-CELL LYMPHOMA (CTCL) |
| 100MG | ZOLINZA | MSD SUB MERCK | N021991 | Oct. 6, 2006 | RX | CAPSULE | ORAL | 7851509 | Feb. 21, 2024 | TREATMENT OF CUTANEOUS MANIFESTATIONS IN PATIENTS WITH CUTANEOUS T-CELL LYMPHOMA (CTCL) |
| 100MG | ZOLINZA | MSD SUB MERCK | N021991 | Oct. 6, 2006 | RX | CAPSULE | ORAL | 7399787 | Feb. 9, 2025 | TREATMENT OF CUTANEOUS MANIFESTATIONS IN PATIENTS WITH CUTANEOUS T-CELL LYMPHOMA (CTCL) |
| 100MG | ZOLINZA | MSD SUB MERCK | N021991 | Oct. 6, 2006 | RX | CAPSULE | ORAL | 8450372 | March 18, 2028 | TREATMENT OF CUTANEOUS MANIFESTATIONS IN PATIENTS WITH CUTANEOUS T-CELL LYMPHOMA (CTCL) |
None
| Target | Class | Pharos | UniProt | Action | Type | Activity value (-log[M]) | Mechanism action | Bioact source | MoA source |
|---|---|---|---|---|---|---|---|---|---|
| Histone deacetylase 2 | Enzyme | INHIBITOR | Ki | 8.80 | CHEMBL | CHEMBL | |||
| Histone deacetylase 1 | Enzyme | INHIBITOR | Ki | 8.89 | CHEMBL | CHEMBL | |||
| Histone deacetylase 3 | Enzyme | INHIBITOR | Ki | 8.30 | CHEMBL | CHEMBL | |||
| Histone deacetylase 6 | Enzyme | INHIBITOR | Ki | 9 | CHEMBL | CHEMBL | |||
| Histone deacetylase 8 | Enzyme | Ki | 6.76 | CHEMBL | |||||
| Histone deacetylase 4 | Enzyme | Ki | 7.80 | CHEMBL | |||||
| Histone deacetylase 9 | Enzyme | Ki | 7.31 | CHEMBL | |||||
| Leukotriene A-4 hydrolase | Enzyme | IC50 | 5.12 | CHEMBL | |||||
| Histone deacetylase 10 | Enzyme | Ki | 7.30 | CHEMBL | |||||
| Histone deacetylase 11 | Enzyme | Ki | 7.89 | CHEMBL | |||||
| Lysine-specific demethylase 4E | Enzyme | IC50 | 4.85 | CHEMBL | |||||
| Bromodomain-containing protein 4 | Unclassified | IC50 | 8 | CHEMBL | |||||
| Histone deacetylase 3/Nuclear receptor corepressor 2 (HDAC3/NCoR2) | Transcription factor | Ki | 8.70 | CHEMBL | |||||
| Histone deacetylase 3/NCoR1 | Transcription factor | Ki | 7.92 | CHEMBL | |||||
| Histone deacetylase | Enzyme | IC50 | 8 | CHEMBL | |||||
| Histone deacetylase 1/3/5/8 | Enzyme | IC50 | 6.96 | CHEMBL | |||||
| Histone deacetylase (HDAC1 and HDAC2) | Enzyme | IC50 | 8 | CHEMBL | |||||
| Potassium voltage-gated channel subfamily H member 2 | Ion channel | IC50 | 6.49 | CHEMBL | |||||
| Epidermal growth factor receptor | Kinase | IC50 | 6.05 | CHEMBL | |||||
| Histone deacetylase 5 | Enzyme | Ki | 7.48 | CHEMBL | |||||
| Histone deacetylase 7 | Enzyme | Ki | 6.89 | CHEMBL | |||||
| HD2 type histone deacetylase HDA106; Histone deacetylase 2b; Uncharacterized protein | Enzyme | IC50 | 7.30 | CHEMBL | |||||
| Histone deacetylase 1 | Enzyme | IC50 | 6.95 | CHEMBL | |||||
| Histone deacetylase | Enzyme | IC50 | 7.55 | CHEMBL | |||||
| Histone deacetylase | Enzyme | IC50 | 7.23 | CHEMBL | |||||
| Histone deacetylase-like amidohydrolase | Enzyme | Kd | 6.52 | CHEMBL | |||||
| Histone deacetylase | Enzyme | IC50 | 7 | CHEMBL | |||||
| Histone deacetylase | Enzyme | IC50 | 6.78 | CHEMBL | |||||
| Histone deacetylase 8 | Unclassified | IC50 | 6.23 | CHEMBL | |||||
| Leukotriene A-4 hydrolase | Enzyme | IC50 | 5.21 | CHEMBL | |||||
| Protein Tat | Unclassified | EC50 | 5.64 | CHEMBL |
| ID | Source |
|---|---|
| 4025777 | VUID |
| N0000179580 | NUI |
| D06320 | KEGG_DRUG |
| 4025777 | VANDF |
| C0672708 | UMLSCUI |
| CHEBI:45716 | CHEBI |
| CHEMBL98 | ChEMBL_ID |
| D000077337 | MESH_DESCRIPTOR_UI |
| DB02546 | DRUGBANK_ID |
| 6852 | IUPHAR_LIGAND_ID |
| 8661 | INN_ID |
| 58IFB293JI | UNII |
| 5311 | PUBCHEM_CID |
| 194337 | RXNORM |
| 22259 | MMSL |
| d05891 | MMSL |
| 011760 | NDDF |
| 422505001 | SNOMEDCT_US |
| 422523009 | SNOMEDCT_US |
| SHH | PDB_CHEM_ID |
| Product | Category | Ingredients | NDC | Form | Quantity | Route | Marketing | Label |
|---|---|---|---|---|---|---|---|---|
| ZOLINZA | HUMAN PRESCRIPTION DRUG LABEL | 1 | 0006-0568 | CAPSULE | 100 mg | ORAL | NDA | 30 sections |
| ZOLINZA | HUMAN PRESCRIPTION DRUG LABEL | 1 | 0006-0568 | CAPSULE | 100 mg | ORAL | NDA | 30 sections |