| Stem definition | Drug id | CAS RN |
|---|---|---|
| depsipeptide derivatives | 4119 | 128517-07-7 |
None
| Property | Value | Reference |
|---|---|---|
| BDDCS (Biopharmaceutical Drug Disposition Classification System) | 2 | Benet LZ, Broccatelli F, Oprea TI |
| MRTD (Maximum Recommended Therapeutic Daily Dose) | 0.64 ยตM/kg/day | Contrera JF, Matthews EJ, Kruhlak NL, Benz RD |
| Vd (Volume of distribution) | 1.20 L/kg | Lombardo F, Berellini G, Obach RS |
| CL (Clearance) | 7.40 mL/min/kg | Lombardo F, Berellini G, Obach RS |
| fu (Fraction unbound in plasma) | 0.07 % | Lombardo F, Berellini G, Obach RS |
| t_half (Half-life) | 11 hours | Lombardo F, Berellini G, Obach RS |
| Date | Agency | Company | Orphan |
|---|---|---|---|
| Nov. 5, 2009 | FDA | CELGENE | |
| July 3, 2017 | PMDA | Celgene KK |
| MedDRA adverse event term | Likelihood ratio | Likelihood ratio threshold | Patients taking drug having adverse event | Patients taking drug not having adverse event | Patients not taking drug having adverse event | Patients not taking drug not having adverse event |
|---|---|---|---|---|---|---|
| Electrocardiogram QT prolonged | 92.68 | 41.84 | 34 | 878 | 59496 | 63428614 |
| Thrombocytopenia | 59.50 | 41.84 | 33 | 879 | 151124 | 63336986 |
| Platelet count decreased | 58.80 | 41.84 | 30 | 882 | 116092 | 63372018 |
| Tumour lysis syndrome | 47.17 | 41.84 | 13 | 899 | 8977 | 63479133 |
| MedDRA adverse event term | Likelihood ratio | Likelihood ratio threshold | Patients taking drug having adverse event | Patients taking drug not having adverse event | Patients not taking drug having adverse event | Patients not taking drug not having adverse event |
|---|---|---|---|---|---|---|
| Platelet count decreased | 50.51 | 36.83 | 35 | 958 | 119682 | 34836256 |
| Thrombocytopenia | 48.61 | 36.83 | 38 | 955 | 156209 | 34799729 |
| MedDRA adverse event term | Likelihood ratio | Likelihood ratio threshold | Patients taking drug having adverse event | Patients taking drug not having adverse event | Patients not taking drug having adverse event | Patients not taking drug not having adverse event |
|---|---|---|---|---|---|---|
| Platelet count decreased | 103.03 | 35.88 | 60 | 1711 | 194604 | 79548013 |
| Thrombocytopenia | 85.98 | 35.88 | 60 | 1711 | 265199 | 79477418 |
| Pyrexia | 50.33 | 35.88 | 68 | 1703 | 678641 | 79063976 |
| Tumour lysis syndrome | 49.58 | 35.88 | 19 | 1752 | 23920 | 79718697 |
| Atrial fibrillation | 48.69 | 35.88 | 38 | 1733 | 197848 | 79544769 |
| Malignant neoplasm progression | 37.55 | 35.88 | 28 | 1743 | 135962 | 79606655 |
| Cutaneous T-cell lymphoma | 36.17 | 35.88 | 9 | 1762 | 2694 | 79739923 |
None
| Source | Code | Description |
|---|---|---|
| ATC | L01XH02 | ANTINEOPLASTIC AND IMMUNOMODULATING AGENTS ANTINEOPLASTIC AGENTS OTHER ANTINEOPLASTIC AGENTS Histone deacetylase (HDAC) inhibitors |
| FDA MoA | N0000175071 | Histone Deacetylase Inhibitors |
| FDA EPC | N0000175588 | Histone Deacetylase Inhibitor |
| MeSH PA | D000903 | Antibiotics, Antineoplastic |
| MeSH PA | D000970 | Antineoplastic Agents |
| MeSH PA | D004791 | Enzyme Inhibitors |
| MeSH PA | D056572 | Histone Deacetylase Inhibitors |
| FDA MoA | N0000187061 | Organic Cation Transporter 2 Inhibitors |
| FDA MoA | N0000190107 | Organic Anion Transporting Polypeptide 1B1 Inhibitors |
| FDA MoA | N0000190108 | Organic Anion Transporting Polypeptide 1B3 Inhibitors |
| FDA MoA | N0000190110 | Organic Anion Transporter 1 Inhibitors |
| FDA MoA | N0000193845 | Bile Salt Export Pump Inhibitors |
| CHEBI has role | CHEBI:35610 | antineoplastic agents |
| CHEBI has role | CHEBI:61115 | histone deacetylase inhibitors |
| Disease | Relation | SNOMED_ID | DOID |
|---|---|---|---|
| Peripheral T-cell lymphoma | indication | 109977009 | |
| Primary cutaneous T-cell lymphoma | indication | 400122007 | |
| Hypokalemia | contraindication | 43339004 | |
| Conduction disorder of the heart | contraindication | 44808001 | |
| Lymphocytopenia | contraindication | 48813009 | DOID:614 |
| Leukopenia | contraindication | 84828003 | DOID:615 |
| Chronic renal failure syndrome | contraindication | 90688005 | |
| Prolonged QT interval | contraindication | 111975006 | |
| Acute disease of cardiovascular system | contraindication | 128487001 | |
| Hypomagnesemia | contraindication | 190855004 | |
| Disease of liver | contraindication | 235856003 | DOID:409 |
| Anemia | contraindication | 271737000 | DOID:2355 |
| Pregnancy, function | contraindication | 289908002 | |
| Thrombocytopenic disorder | contraindication | 302215000 | DOID:1588 |
| Neutropenic disorder | contraindication | 303011007 | DOID:1227 |
| Breastfeeding (mother) | contraindication | 413712001 | |
| Congenital long QT syndrome | contraindication | 442917000 |
None
None
| Dissociation level | Dissociation constant | Type (acidic/basic) |
|---|---|---|
| pKa1 | 13.47 | acidic |
None
None
| Target | Class | Pharos | UniProt | Action | Type | Activity value (-log[M]) | Mechanism action | Bioact source | MoA source |
|---|---|---|---|---|---|---|---|---|---|
| Histone deacetylase | Enzyme | INHIBITOR | Ki | 5.96 | IUPHAR | DRUG LABEL | |||
| Histone deacetylase 2 | Enzyme | IC50 | 7.33 | WOMBAT-PK | |||||
| Histone deacetylase 1 | Enzyme | IC50 | 7 | WOMBAT-PK | |||||
| Histone deacetylase 3 | Enzyme | Ki | 7.60 | WOMBAT-PK | |||||
| Histone deacetylase 6 | Enzyme | Ki | 6.52 | WOMBAT-PK | |||||
| Histone deacetylase 7 | Enzyme | INHIBITOR | Ki | 5.90 | IUPHAR | ||||
| Histone deacetylase 8 | Enzyme | INHIBITOR | Ki | 9.82 | IUPHAR | ||||
| Histone deacetylase 5 | Enzyme | INHIBITOR | Ki | 6.26 | IUPHAR | ||||
| Histone deacetylase 9 | Enzyme | INHIBITOR | Ki | 5.96 | IUPHAR | ||||
| Bromodomain-containing protein 4 | Unclassified | IC50 | 7.44 | CHEMBL | |||||
| Histone deacetylase 3/Nuclear receptor corepressor 2 (HDAC3/NCoR2) | Transcription factor | IC50 | 7.74 | CHEMBL | |||||
| Histone deacetylase 3/NCoR1 | Transcription factor | Ki | 9.82 | CHEMBL | |||||
| Histone deacetylase 4 | Enzyme | IC50 | 6.29 | WOMBAT-PK | |||||
| Histone deacetylase 6 | Enzyme | IC50 | 6.41 | CHEMBL |
| ID | Source |
|---|---|
| 4029461 | VUID |
| N0000180306 | NUI |
| D06637 | KEGG_DRUG |
| 4029461 | VANDF |
| C1527027 | UMLSCUI |
| CHEBI:61080 | CHEBI |
| CHEMBL343448 | ChEMBL_ID |
| DB06176 | DRUGBANK_ID |
| C087123 | MESH_SUPPLEMENTAL_RECORD_UI |
| 7006 | IUPHAR_LIGAND_ID |
| 8656 | INN_ID |
| CX3T89XQBK | UNII |
| 5352062 | PUBCHEM_CID |
| 877436 | RXNORM |
| 169125 | MMSL |
| 267261 | MMSL |
| 26838 | MMSL |
| d07512 | MMSL |
| 013396 | NDDF |
| 444608004 | SNOMEDCT_US |
| 444737005 | SNOMEDCT_US |
| Product | Category | Ingredients | NDC | Form | Quantity | Route | Marketing | Label |
|---|---|---|---|---|---|---|---|---|
| Romidepsin | HUMAN PRESCRIPTION DRUG LABEL | 1 | 0703-4004 | INJECTION, SOLUTION, CONCENTRATE | 5 mg | INTRAVENOUS | NDA | 29 sections |
| Romidepsin | HUMAN PRESCRIPTION DRUG LABEL | 1 | 0703-4004 | INJECTION, SOLUTION, CONCENTRATE | 5 mg | INTRAVENOUS | NDA | 29 sections |
| Romidepsin | HUMAN PRESCRIPTION DRUG LABEL | 1 | 0703-4004 | INJECTION, SOLUTION, CONCENTRATE | 5 mg | INTRAVENOUS | NDA | 29 sections |